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COLON - Expression summary

RNA expression
HPA:15.9TPM
GTEx:21.5RPKM
FANTOM5:54.7Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

15.9
overview Male, age 54 Sample 1
TPM: 10.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 8.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 49.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 12.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 26.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 9.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 21.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 23.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 17
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 30.3
Samples: 149

Max RPKM: 58.9
Min RPKM: 5.2
Std RPKM: 10.7
Median RPKM: 31.1
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 58.9
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 56.9
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 55.4
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 53.4
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 48.5
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 47.8
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 47.3
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 46.7
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 46.5
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 45.8
Show all
Colon - Transverse
RPKM: 14.9
Samples: 196

Max RPKM: 58.8
Min RPKM: 1.4
Std RPKM: 11.1
Median RPKM: 10.0
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 58.8
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 48.8
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 46.6
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 43.4
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 43.2
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 41.9
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 40.9
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 39.9
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 38.8
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 38.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

54.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 54.7
FF:10014-101C5 62,83,84 years, mixed 54.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.