Cell atlas - SLC9C1 - The Human Protein Atlas

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SLC9C1

TISSUE

CELL

PATHOLOGY

CELL ATLAS RNA EXPRESSION

GENE/PROTEIN

Dictionary

Human cell

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GENERAL INFORMATION
Gene name	SLC9C1
Gene description	Solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1
Protein class	Predicted membrane proteins Transporters
Predicted localization	Membrane
Number of transcripts	3
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION
Summary
RNA cell category	Not detected
Protein evidence	Evidence at transcript level
Main location	Not available

DATA RELIABILITY
Reliability score	Pending cell analysis.

ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Not detected Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

GENE INFORMATION
Gene name	SLC9C1 (HGNC Symbol)
Synonyms	NHE, SLC9A10
Description	Solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 (HGNC Symbol)
Entrez gene summary	SLC9A10 is a member of the sodium-hydrogen exchanger (NHE) family (see SLC9A1, MIM 107310) and is required for male fertility and sperm motility (Wang et al., 2003 [PubMed 14634667]).[supplied by OMIM, Apr 2009]
Chromosome	3
Cytoband	q13.2
Chromosome location (bp)	112140887 - 112294258
Protein evidence	Evidence at transcript level (all genes)
Ensembl	ENSG00000172139 (version 83.38)
Entrez gene	285335
UniProt	Q4G0N8 (UniProt - Evidence at transcript level)
neXtProt	NX_Q4G0N8
Antibodypedia	SLC9C1 antibodies

PROTEIN BROWSER

SLC9C1-001	SLC9C1-002	SLC9C1-004

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SLC9C1-001 ENSP00000306627 ENST00000305815	Q4G0N8 [Direct mapping] Sodium/hydrogen exchanger 10 Show all	Transporters Electrochemical Potential-driven transporters Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based >9TM proteins predicted by MDM Show all	GO:0005886 [plasma membrane] GO:0006812 [cation transport] GO:0006814 [sodium ion transport] GO:0007275 [multicellular organismal development] GO:0007283 [spermatogenesis] GO:0015299 [solute:proton antiporter activity] GO:0016021 [integral component of membrane] GO:0030154 [cell differentiation] GO:0030317 [sperm motility] GO:0031514 [motile cilium] GO:0034220 [ion transmembrane transport] GO:0055085 [transmembrane transport] GO:1902600 [hydrogen ion transmembrane transport] Show all	1177 aa 135.2 kDa	No	>9
SLC9C1-002 ENSP00000420688 ENST00000487372	Q4G0N8 [Direct mapping] Sodium/hydrogen exchanger 10 Show all	Transporters Electrochemical Potential-driven transporters Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based >9TM proteins predicted by MDM Show all	GO:0005886 [plasma membrane] GO:0006812 [cation transport] GO:0006814 [sodium ion transport] GO:0007275 [multicellular organismal development] GO:0007283 [spermatogenesis] GO:0015299 [solute:proton antiporter activity] GO:0016021 [integral component of membrane] GO:0030154 [cell differentiation] GO:0034220 [ion transmembrane transport] GO:0055085 [transmembrane transport] GO:1902600 [hydrogen ion transmembrane transport] Show all	1129 aa 129.4 kDa	No	>9
SLC9C1-004 ENSP00000417274 ENST00000486574	C9J3M6 [Direct mapping] Sodium/hydrogen exchanger 10 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0006812 [cation transport] GO:0015299 [solute:proton antiporter activity] GO:0016021 [integral component of membrane] GO:0030317 [sperm motility] GO:0055085 [transmembrane transport] GO:1902600 [hydrogen ion transmembrane transport] Show all	85 aa 9.8 kDa	No	1

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.