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HCFC1

COLON - Expression summary

RNA expression
HPA:9.9TPM
GTEx:11.7RPKM
FANTOM5:34.5Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

9.9
overview Male, age 54 Sample 1
TPM: 11.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 7.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 8.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 13.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 11.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 10.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 12.7
Samples: 149

Max RPKM: 20.0
Min RPKM: 5.3
Std RPKM: 2.6
Median RPKM: 12.9
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 20.0
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 18.5
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 18.4
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 17.9
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 17.7
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 17.4
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 17.2
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 17.1
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 17.0
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 16.7
Show all
Colon - Transverse
RPKM: 11.0
Samples: 196

Max RPKM: 17.9
Min RPKM: 3.0
Std RPKM: 2.5
Median RPKM: 10.6
GTEX-117YX-0826-SM-5H11J 50-59 years, male 17.9
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 17.6
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 16.8
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 16.7
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 16.7
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 16.5
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 16.1
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 16.1
GTEX-11GSP-1626-SM-5986N 60-69 years, female 15.9
GTEX-RU1J-1326-SM-46MUL 20-29 years, female 15.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

34.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 34.5
FF:10014-101C5 62,83,84 years, mixed 34.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.