Tissue expression of ACSM6 - Summary - The Human Protein Atlas

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ACSM6

TISSUE

CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	ACSM6
Gene description	Acyl-CoA synthetase medium-chain family member 6
Protein class	Enzymes Predicted membrane proteins
Predicted localization	Membrane
Number of transcripts	2
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Tissue enhanced (stomach)
GTEx:	Tissue enhanced (pancreas, urinary bladder)
FANTOM5:	Not detected

Protein evidence

Evidence at protein level

Protein expression

Estimation of protein expression could not be performed. View primary data.

DATA RELIABILITY
Data reliability description	RNA-based expert annotation gave inconclusive results. Pending external verification.
Reliability score	Uncertain based on 1 antibody. HPA044593
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

N/A

Caudate

N/A

N/A

Cerebellum

N/A

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

N/A

Bronchus

N/A

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

N/A

Skin

N/A

Skin

N/A

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
RNA-based expert annotation could not be performed, due to inconclusive results. View immunohistochemistry primary data.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (stomach)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (pancreas, urinary bladder)
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Not detected

GENE INFORMATION
Gene name	ACSM6 (HGNC Symbol)
Synonyms	bA310E22.3, C10orf129
Description	Acyl-CoA synthetase medium-chain family member 6 (HGNC Symbol)
Entrez gene summary
Chromosome	10
Cytoband	q23.33
Chromosome location (bp)	95194200 - 95228928
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000173124 (version 83.38)
Entrez gene	142827
UniProt	Q6P461 (UniProt - Evidence at transcript level)
neXtProt	NX_Q6P461
Antibodypedia	ACSM6 antibodies

PROTEIN BROWSER

ACSM6-001	ACSM6-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
ACSM6-001 ENSP00000377573 ENST00000394005	Q6P461 [Direct mapping] Acyl-coenzyme A synthetase ACSM6, mitochondrial Show all	Enzymes ENZYME proteins Ligase Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0003824 [catalytic activity] GO:0005524 [ATP binding] GO:0005525 [GTP binding] GO:0005739 [mitochondrion] GO:0006631 [fatty acid metabolic process] GO:0008152 [metabolic process] GO:0031647 [regulation of protein stability] GO:0046872 [metal ion binding] GO:0047760 [butyrate-CoA ligase activity] GO:1903955 [positive regulation of protein targeting to mitochondrion] Show all	480 aa 53.6 kDa	No	2
ACSM6-201 ENSP00000340296 ENST00000341686	Q6P461 [Direct mapping] Acyl-coenzyme A synthetase ACSM6, mitochondrial Show all	Enzymes ENZYME proteins Ligase Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0003824 [catalytic activity] GO:0005524 [ATP binding] GO:0005525 [GTP binding] GO:0005739 [mitochondrion] GO:0006631 [fatty acid metabolic process] GO:0008152 [metabolic process] GO:0031647 [regulation of protein stability] GO:0046872 [metal ion binding] GO:0047760 [butyrate-CoA ligase activity] GO:1903955 [positive regulation of protein targeting to mitochondrion] Show all	480 aa 53.6 kDa	No	2

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.