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USMG5

COLON - Expression summary

RNA expression
HPA:501.1TPM
GTEx:59.5RPKM
FANTOM5:206.4Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

501.1
overview Male, age 54 Sample 1
TPM: 428.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 626.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 648.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 612.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 325.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 533.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 570.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 533.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 445
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 442
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 495
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 441.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 411.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

59.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 52.6
Samples: 149

Max RPKM: 79.8
Min RPKM: 22.5
Std RPKM: 9.5
Median RPKM: 51.5
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 79.8
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 78.7
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 76.3
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 74.8
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 74.2
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 73.3
GTEX-Y3I4-1126-SM-4TT7Y 50-59 years, male 72.9
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 71.3
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 70.6
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 69.8
Show all
Colon - Transverse
RPKM: 64.7
Samples: 196

Max RPKM: 136.7
Min RPKM: 33.2
Std RPKM: 17.9
Median RPKM: 60.7
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 136.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 130.0
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 116.5
GTEX-QMRM-1226-SM-447C6 50-59 years, male 104.3
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 102.8
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 102.0
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 100.8
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 99.3
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 97.3
GTEX-R55G-1226-SM-48FDC 40-49 years, female 96.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

206.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 206.4
FF:10014-101C5 62,83,84 years, mixed 206.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.