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COLON - Expression summary

RNA expression
HPA:0.7TPM
GTEx:1.1RPKM
FANTOM5:1.8Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

0.7
overview Male, age 54 Sample 1
TPM: 0.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 0.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.4
Samples: 149

Max RPKM: 3.7
Min RPKM: 0.2
Std RPKM: 0.8
Median RPKM: 1.2
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 3.7
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 3.7
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 3.6
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 3.4
GTEX-11GS4-1826-SM-5HL4T 60-69 years, male 3.3
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 3.2
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 3.1
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 3.0
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 3.0
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 3.0
Show all
Colon - Transverse
RPKM: 0.8
Samples: 196

Max RPKM: 4.2
Min RPKM: 0.1
Std RPKM: 0.5
Median RPKM: 0.7
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 4.2
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 2.8
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 2.6
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 2.5
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 2.3
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 2.1
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 2.1
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 2.1
GTEX-11GSP-1626-SM-5986N 60-69 years, female 2.0
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 1.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1.8
FF:10014-101C5 62,83,84 years, mixed 1.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.