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AMIGO1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.4TPM
GTEx:3.9RPKM
FANTOM5:17.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA046152

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

2.4
overview Male, age 54 Sample 1
TPM: 2.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.2
Samples: 149

Max RPKM: 9.1
Min RPKM: 2.2
Std RPKM: 1.3
Median RPKM: 5.2
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 9.1
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 8.3
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 8.1
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 8.0
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 8.0
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 7.9
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 7.7
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 7.5
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 7.3
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 7.2
Show all
Colon - Transverse
RPKM: 2.9
Samples: 196

Max RPKM: 10.2
Min RPKM: 0.2
Std RPKM: 1.7
Median RPKM: 2.6
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 10.2
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 9.4
GTEX-13VXT-2426-SM-5LU46 20-29 years, female 6.8
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 6.4
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 6.4
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 6.3
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 6.2
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 6.1
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 6.1
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 6.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

17.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 17.2
FF:10014-101C5 62,83,84 years, mixed 17.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.