Fields »
ABOUT
HELP
BLOG
ALG12

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:7.3TPM
GTEx:10.9RPKM
FANTOM5:21.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA051665

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

7.3
overview Male, age 54 Sample 1
TPM: 11.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 6.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 4.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 6.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 6.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.0
Samples: 149

Max RPKM: 15.3
Min RPKM: 4.8
Std RPKM: 1.8
Median RPKM: 8.9
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 15.3
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 12.6
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 12.5
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 12.5
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 12.4
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 12.4
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 12.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 12.4
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 12.4
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 12.3
Show all
Colon - Transverse
RPKM: 12.4
Samples: 196

Max RPKM: 21.2
Min RPKM: 3.4
Std RPKM: 3.0
Median RPKM: 12.5
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 21.2
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 21.0
GTEX-131XE-0826-SM-5HL9W 50-59 years, male 20.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 19.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 18.8
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 18.5
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 18.3
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 18.3
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 18.0
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 18.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

21.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 21.0
FF:10014-101C5 62,83,84 years, mixed 21.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.