Fields »
ABOUT
HELP
BLOG
TRIM61

COLON - Expression summary

RNA expression
HPA:1.4TPM
GTEx:0.2RPKM
FANTOM5:0.8Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA049109

  

Glandular cells

 Medium  
 

COLON - HPA RNA-seq

Average TPM

1.4
overview Male, age 54 Sample 1
TPM: 1.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 2.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 0.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.2
Samples: 149

Max RPKM: 1.0
Min RPKM: 0.0
Std RPKM: 0.1
Median RPKM: 0.2
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 1.0
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 0.9
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 0.6
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 0.6
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 0.6
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 0.6
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 0.5
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 0.5
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 0.5
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 0.5
Show all
Colon - Transverse
RPKM: 0.2
Samples: 196

Max RPKM: 1.0
Min RPKM: 0.0
Std RPKM: 0.1
Median RPKM: 0.1
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 1.0
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 0.9
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 0.8
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 0.8
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 0.7
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 0.6
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 0.6
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 0.6
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 0.6
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 0.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

0.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 0.8
FF:10014-101C5 62,83,84 years, mixed 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.