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COLON - Expression summary

RNA expression
HPA:1.9TPM
GTEx:2.1RPKM
FANTOM5:4.8Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

1.9
overview Male, age 54 Sample 1
TPM: 3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 3.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.3
Samples: 149

Max RPKM: 16.5
Min RPKM: 0.5
Std RPKM: 1.8
Median RPKM: 1.8
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 16.5
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 9.3
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 6.5
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 6.5
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 6.3
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 5.8
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 5.6
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 5.4
GTEX-145LS-2926-SM-5O99G 60-69 years, female 5.3
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 4.7
Show all
Colon - Transverse
RPKM: 1.9
Samples: 196

Max RPKM: 8.3
Min RPKM: 0.5
Std RPKM: 1.1
Median RPKM: 1.5
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 8.3
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 6.5
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 6.2
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 5.2
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 4.9
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 4.8
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 4.7
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 4.7
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 4.6
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 4.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

4.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 4.8
FF:10014-101C5 62,83,84 years, mixed 4.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.