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PSMD13

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:26.6TPM
GTEx:46.3RPKM
FANTOM5:80.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
 

Antibody staining

Antibody HPA038691

  

Antibody HPA038692

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Medium   Medium  
   
   

COLON - HPA RNA-seq

Average TPM

26.6
overview Male, age 54 Sample 1
TPM: 14.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 28.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 22.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 23.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 29.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 27.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 29.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 26.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 32.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 36.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 33.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 18.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

46.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 44.9
Samples: 149

Max RPKM: 64.5
Min RPKM: 34.3
Std RPKM: 5.6
Median RPKM: 44.3
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 64.5
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 64.3
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 63.6
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 58.4
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 57.9
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 55.8
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 54.7
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 54.6
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 54.2
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 53.8
Show all
Colon - Transverse
RPKM: 47.5
Samples: 196

Max RPKM: 100.1
Min RPKM: 30.8
Std RPKM: 8.1
Median RPKM: 45.8
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 100.1
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 77.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 71.6
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 68.1
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 66.4
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 64.8
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 63.9
GTEX-QMRM-1226-SM-447C6 50-59 years, male 63.8
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 63.7
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 63.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

80.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 80.4
FF:10014-101C5 62,83,84 years, mixed 80.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.