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PMEL
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  • CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

PMEL

Gene description

Premelanosome protein

Protein class

Predicted intracellular proteins
Predicted membrane proteins
Predicted secreted proteins

Predicted localization

Intracellular,Membrane,Secreted

Number of transcripts

12
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enriched (skin)
GTEx:Group enriched (cervix, uterine, endometrium, skin)
FANTOM5:Tissue enriched (retina)

Protein evidence

Evidence at protein level

Protein expression

Selective cytoplasmic expression in melanocytes.

DATA RELIABILITY

Data reliability
description

Antibody staining consistent with RNA expression data.

Reliability score

Supported based on 1 antibody.
HPA031649
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Skin

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (skin)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Group enriched (cervix, uterine, endometrium, skin)
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (retina)

GENE INFORMATION

Gene name

PMEL (HGNC Symbol)

Synonyms

D12S53E, gp100, Pmel17, SI, SIL, SILV

Description

Premelanosome protein (HGNC Symbol)

Entrez gene summary

This gene encodes a melanocyte-specific type I transmembrane glycoprotein. The encoded protein is enriched in melanosomes, which are the melanin-producing organelles in melanocytes, and plays an essential role in the structural organization of premelanosomes. This protein is involved in generating internal matrix fibers that define the transition from Stage I to Stage II melanosomes. This protein undergoes a complex pattern of prosttranslational processing and modification that is essential to the proper functioning of the protein. A secreted form of this protein that is released by proteolytic ectodomain shedding may be used as a melanoma-specific serum marker. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jan 2011]

Chromosome

12

Cytoband

q13.2

Chromosome location (bp)

55954105 - 55973317

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000185664 (version 83.38)

Entrez gene

6490

UniProt

P40967 (UniProt - Evidence at protein level)

neXtProt

NX_P40967

Antibodypedia

PMEL antibodies

PROTEIN BROWSER

«
PMEL-001
PMEL-002
PMEL-003
PMEL-004
PMEL-005
PMEL-007
PMEL-008
PMEL-012
PMEL-013
PMEL-015
PMEL-016
PMEL-017
»

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

PMEL-001
ENSP00000448828
ENST00000548747
P40967 [Direct mapping]
Melanocyte protein PMEL M-alpha M-beta
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0016021 [integral component of membrane]
GO:0032438 [melanosome organization]
GO:0032585 [multivesicular body membrane]
GO:0042470 [melanosome]
Show all
661 aa
70.3 kDa
Yes 1
PMEL-002
ENSP00000447374
ENST00000548493
P40967 [Direct mapping]
Melanocyte protein PMEL M-alpha M-beta
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0016021 [integral component of membrane]
GO:0032438 [melanosome organization]
GO:0032585 [multivesicular body membrane]
GO:0042470 [melanosome]
Show all
661 aa
70.3 kDa
Yes 1
PMEL-003
ENSP00000449690
ENST00000552882
P40967 [Direct mapping]
Melanocyte protein PMEL M-alpha M-beta
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0016021 [integral component of membrane]
GO:0032438 [melanosome organization]
GO:0032585 [multivesicular body membrane]
GO:0042470 [melanosome]
Show all
661 aa
70.3 kDa
Yes 1
PMEL-004
ENSP00000450036
ENST00000550464
P40967 [Direct mapping]
Melanocyte protein PMEL M-alpha M-beta
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0016021 [integral component of membrane]
GO:0032438 [melanosome organization]
GO:0032585 [multivesicular body membrane]
GO:0042470 [melanosome]
Show all
575 aa
60.6 kDa
Yes 1
PMEL-005
ENSP00000402758
ENST00000449260
P40967 [Direct mapping]
Melanocyte protein PMEL M-alpha M-beta
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0016021 [integral component of membrane]
GO:0032438 [melanosome organization]
GO:0032585 [multivesicular body membrane]
GO:0042438 [melanin biosynthetic process]
GO:0042470 [melanosome]
Show all
668 aa
70.9 kDa
Yes 1
PMEL-007
ENSP00000448029
ENST00000550447
F8VUB1 [Direct mapping]
Melanocyte protein PMEL
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016021 [integral component of membrane]
Show all
290 aa
30.8 kDa
Yes 1
PMEL-008
ENSP00000446633
ENST00000549418
F8VZV2 [Direct mapping]
Melanocyte protein PMEL
Show all
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
151 aa
16.6 kDa
Yes 0
PMEL-012
ENSP00000448849
ENST00000547137
F8VXH8 [Direct mapping]
Melanocyte protein PMEL
Show all
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
344 aa
36.7 kDa
Yes 0
PMEL-013
ENSP00000446662
ENST00000546543
F8W1D1 [Direct mapping]
Melanocyte protein PMEL
Show all
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
299 aa
32.3 kDa
Yes 0
PMEL-015
ENSP00000448871
ENST00000549233
F8VYZ1 [Direct mapping]
Melanocyte protein PMEL
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
134 aa
15 kDa
No 0
PMEL-016
ENSP00000447732
ENST00000548803
F8VZC6 [Direct mapping]
Melanocyte protein PMEL
Show all
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
296 aa
31.7 kDa
Yes 0
PMEL-017
ENSP00000449520
ENST00000549404
H0YIJ2 [Direct mapping]
Melanocyte protein PMEL
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
452 aa
47.4 kDa
No 0

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The Human Protein Atlas project is funded
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