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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:178.4TPM
GTEx:67.3RPKM
FANTOM5:301.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA043640

  

Antibody HPA046280

  

Antibody CAB010880

  

Endothelial cells

 Medium   Medium   Low  

Glandular cells

 Medium   Medium   Medium  

Peripheral nerve/ganglion

 Medium   Medium   High  
     
     
     

COLON - HPA RNA-seq

Average TPM

178.4
overview Male, age 54 Sample 1
TPM: 183
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 139.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 191.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 198.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 112.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 212.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 157.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 205.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 131.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 251.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 156.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 209.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 167.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

67.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 45.0
Samples: 149

Max RPKM: 115.0
Min RPKM: 9.8
Std RPKM: 23.2
Median RPKM: 42.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 115.0
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 108.7
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 107.8
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 107.4
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 104.4
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 94.6
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 84.7
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 82.1
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 81.3
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 80.1
Show all
Colon - Transverse
RPKM: 84.2
Samples: 196

Max RPKM: 223.3
Min RPKM: 10.3
Std RPKM: 42.6
Median RPKM: 76.4
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 223.3
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 210.0
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 209.4
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 206.3
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 198.6
GTEX-144GM-1226-SM-5LU52 20-29 years, male 195.8
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 194.3
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 193.6
GTEX-QMRM-1226-SM-447C6 50-59 years, male 184.1
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 177.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

301.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 301.3
FF:10014-101C5 62,83,84 years, mixed 301.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.