Fields »
ABOUT
HELP
BLOG
HBA2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:79.3TPM
GTEx:39.8RPKM
FANTOM5:0.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA043780

  

Antibody CAB038417

  

Endothelial cells

 Medium   Not detected  

Glandular cells

 Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

79.3
overview Male, age 54 Sample 1
TPM: 74
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 47.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 6.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 425
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 18.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 38.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 76.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 32.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 12.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 40.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 154.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 99
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

39.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 38.2
Samples: 149

Max RPKM: 452.6
Min RPKM: 0.3
Std RPKM: 72.4
Median RPKM: 12.4
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 452.6
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 451.6
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 318.1
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 282.1
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 231.1
GTEX-11GS4-1826-SM-5HL4T 60-69 years, male 230.8
GTEX-145LS-2926-SM-5O99G 60-69 years, female 221.6
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 213.1
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 162.7
GTEX-1212Z-1826-SM-5FQSH 60-69 years, male 127.1
Show all
Colon - Transverse
RPKM: 40.9
Samples: 196

Max RPKM: 1651.1
Min RPKM: 0.0
Std RPKM: 155.5
Median RPKM: 6.0
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 1651.1
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 1227.1
GTEX-1128S-1626-SM-5H12O 60-69 years, female 420.4
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 398.6
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 315.6
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 258.4
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 210.5
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 208.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 168.6
GTEX-PLZ6-0926-SM-3P5ZQ 30-39 years, male 167.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

0.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 0.0
FF:10014-101C5 62,83,84 years, mixed 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.