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COLON - Expression summary

RNA expression
HPA:1.3TPM
GTEx:0.5RPKM
FANTOM5:0.0Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

1.3
overview Male, age 54 Sample 1
TPM: 0.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.3
Samples: 149

Max RPKM: 1.7
Min RPKM: 0.0
Std RPKM: 0.3
Median RPKM: 0.3
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 1.7
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 1.4
GTEX-145LS-2926-SM-5O99G 60-69 years, female 1.4
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 1.3
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 1.2
GTEX-147JS-2626-SM-5S2UX 60-69 years, male 1.1
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 1.1
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 0.9
GTEX-1212Z-1826-SM-5FQSH 60-69 years, male 0.8
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 0.8
Show all
Colon - Transverse
RPKM: 0.5
Samples: 196

Max RPKM: 2.0
Min RPKM: 0.0
Std RPKM: 0.3
Median RPKM: 0.5
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 2.0
GTEX-XQ8I-2126-SM-4BOOM 50-59 years, male 2.0
GTEX-PLZ5-1126-SM-3P613 50-59 years, male 1.7
GTEX-SNOS-1226-SM-4DM5H 40-49 years, male 1.7
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 1.5
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 1.5
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 1.5
GTEX-RM2N-0926-SM-48FD1 50-59 years, male 1.5
GTEX-XYKS-2226-SM-4E3IU 60-69 years, female 1.5
GTEX-VJYA-2026-SM-4KL1K 60-69 years, male 1.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

0.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 0.0
FF:10014-101C5 62,83,84 years, mixed 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.