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XRCC6

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:142.6TPM
GTEx:85.3RPKM
FANTOM5:134.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA047549

  

Antibody HPA062226

  

Antibody CAB004254

  

Endothelial cells

 Medium   Medium   High  

Glandular cells

 High   High   High  

Peripheral nerve/ganglion

 High   High  
     
     
     

COLON - HPA RNA-seq

Average TPM

142.6
overview Male, age 54 Sample 1
TPM: 122.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 118.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 112.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 113.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 97.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 180.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 208.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 137.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 143.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 193.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 178.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 150.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 96.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

85.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 86.1
Samples: 149

Max RPKM: 132.4
Min RPKM: 45.1
Std RPKM: 14.3
Median RPKM: 86.5
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 132.4
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 130.0
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 122.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 113.1
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 112.3
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 111.1
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 110.5
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 107.9
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 107.3
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 106.9
Show all
Colon - Transverse
RPKM: 84.7
Samples: 196

Max RPKM: 130.7
Min RPKM: 44.9
Std RPKM: 14.0
Median RPKM: 84.8
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 130.7
GTEX-QMRM-1226-SM-447C6 50-59 years, male 128.8
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 117.7
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 117.6
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 117.4
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 117.2
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 113.9
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 113.0
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 112.4
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 110.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

134.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 134.6
FF:10014-101C5 62,83,84 years, mixed 134.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.