Expression of C20orf96 in cancer - Summary - The Human Protein Atlas

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C20orf96

TISSUE

CELL

PATHOLOGY

PATHOLOGY ATLAS

GENE/PROTEIN

Antibody validation

Dictionary


Level of antibody staining/expression
	High Medium Low Not detected

GENERAL INFORMATION
Gene name	C20orf96
Gene description	Chromosome 20 open reading frame 96
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	3
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HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):	Expressed in all
HPA (cell line):	Mixed
HPA (normal tissue):	Expressed in all

Protein evidence

Evidence at transcript level

Protein expression
normal tissue

Cytoplasmic expression in selected tissues.

ANTIBODY IHC RELIABILITY
Data reliability description	Antibody staining mainly not consistent with RNA expression data. Pending external verification.
Reliability score	Uncertain based on 1 antibody. HPA048649
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PROGNOSTIC SUMMARY
Prognostic marker in pancreatic cancer (favourable), liver cancer (unfavourable) and urothelial cancer (favourable).
Pancreatic cancer p<0.001 Liver cancer p<0.001 Urothelial cancer p<0.001 Show all

RNA EXPRESSION OVERVIEW
TCGA dataset RNA cancer category: Expressed in all

PROTEIN EXPRESSION

Colorectal cancer

Prostate cancer

STAINING SUMMARY

HPA048649

GENE INFORMATION
Gene name	C20orf96 (HGNC Symbol)
Synonyms	dJ1103G7.2
Description	Chromosome 20 open reading frame 96 (HGNC Symbol)
Entrez gene summary
Chromosome	20
Cytoband	p13
Chromosome location (bp)	270863 - 290778
Protein evidence	Evidence at transcript level (all genes)
Ensembl	ENSG00000196476 (version 83.38)
Entrez gene	140680
UniProt	Q9NUD7 (UniProt - Evidence at transcript level)
neXtProt	NX_Q9NUD7
Antibodypedia	C20orf96 antibodies

PROTEIN BROWSER

C20orf96-001	C20orf96-002	C20orf96-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
C20orf96-001 ENSP00000353470 ENST00000360321	Q9NUD7 [Direct mapping] Uncharacterized protein C20orf96 Show all	Predicted intracellular proteins Show all		363 aa 42.9 kDa	No	0
C20orf96-002 ENSP00000371806 ENST00000382369	Q5JYC3 [Direct mapping] Uncharacterized protein C20orf96 Show all	Predicted intracellular proteins Show all		328 aa 38.7 kDa	No	0
C20orf96-201 ENSP00000383128 ENST00000400269	F5GZA9 [Direct mapping] Uncharacterized protein C20orf96 Show all	Predicted intracellular proteins Show all		362 aa 42.8 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.