Tissue expression of RP11-347C12.1 - Summary - The Human Protein Atlas

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RP11-347C12.1

TISSUE

CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	RP11-347C12.1
Gene description	Putative NPIP-like protein LOC613037
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Mixed
GTEx:	Mixed

Protein evidence

Evidence at protein level

Protein expression

Nuclear expression in several tissues types.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data. Pending external verification. Caution, targets protein from more than one gene.
Reliability score	Approved based on 1 antibody. HPA053611
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Mixed
GTEx dataset Organ Expression Alphabetical RNA tissue category: Mixed

GENE INFORMATION
Gene name	RP11-347C12.1
Synonyms
Description	Putative NPIP-like protein LOC613037 (UniProtKB/Swiss-Prot)
Entrez gene summary
Chromosome	16
Cytoband	p11.2
Chromosome location (bp)	30222937 - 30254510
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000198064 (version 83.38)
Entrez gene	440345
UniProt	A6NJU9 (UniProt - Uncertain)
neXtProt	NX_A6NJU9
Antibodypedia	RP11-347C12.1 antibodies

PROTEIN BROWSER

RP11-347C12.1-001	RP11-347C12.1-003	RP11-347C12.1-201	RP11-347C12.1-202

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
RP11-347C12.1-001 ENSP00000429734 ENST00000520915	A6NJU9 [Target identity:100%; Query identity:100%] Putative NPIP-like protein LOC613037 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	1138 aa 126 kDa	No	1
RP11-347C12.1-003 ENSP00000455945 ENST00000568053	H3BQU5 [Direct mapping] Uncharacterized protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SPOCTOPUS predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	84 aa 9.7 kDa	No	1
RP11-347C12.1-201 ENSP00000481914 ENST00000618637	C9JGN3 [Direct mapping] Nuclear pore complex-interacting protein family member B3; Nuclear pore complex-interacting protein family member B5; Uncharacterized protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	250 aa 29.3 kDa	Yes	2
RP11-347C12.1-202 ENSP00000444728 ENST00000543463	F5GW90 [Direct mapping] Uncharacterized protein Show all	Predicted intracellular proteins Show all		420 aa 45.8 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.