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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:3.4TPM
GTEx:2.5RPKM

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA043789

  

Endothelial cells

 Not detected  

Glandular cells

 High  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

3.4
overview Male, age 54 Sample 1
TPM: 4.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 3.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 3.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 3.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.5
Samples: 149

Max RPKM: 4.1
Min RPKM: 1.1
Std RPKM: 0.6
Median RPKM: 2.6
GTEX-13111-1926-SM-5GCOL 50-59 years, male 4.1
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 4.0
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 3.8
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 3.8
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 3.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 3.7
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 3.6
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 3.6
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 3.6
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 3.6
Show all
Colon - Transverse
RPKM: 2.5
Samples: 196

Max RPKM: 4.2
Min RPKM: 0.5
Std RPKM: 0.5
Median RPKM: 2.5
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 4.2
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 4.1
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 4.0
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 3.9
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 3.9
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 3.8
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 3.8
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 3.8
GTEX-11NSD-1626-SM-5986U 20-29 years, male 3.7
GTEX-S341-1426-SM-4AD6U 40-49 years, female 3.6
Show all

COLON - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.