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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:8756.5TPM
GTEx:12882.6RPKM
FANTOM5:974.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody CAB032215

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

8756.5
overview Male, age 54 Sample 1
TPM: 6976.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 3796.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3316
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7749.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4559.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12692.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13371.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 13190.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 9510
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5014.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10417.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 10192
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13047.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12882.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10232.4
Samples: 149

Max RPKM: 51845.2
Min RPKM: 2062.5
Std RPKM: 4888.5
Median RPKM: 9823.4
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 51845.2
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 21877.8
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 19465.7
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 19055.9
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 18724.0
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 18160.6
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 15898.8
GTEX-ZA64-1426-SM-5CVMC 20-29 years, male 15874.1
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 15620.5
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 15347.1
Show all
Colon - Transverse
RPKM: 14897.3
Samples: 196

Max RPKM: 39943.1
Min RPKM: 1255.6
Std RPKM: 6128.6
Median RPKM: 14095.1
GTEX-XBEW-1926-SM-4SOJO 40-49 years, male 39943.1
GTEX-1211K-1726-SM-5FQUJ 60-69 years, female 32632.8
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 32265.8
GTEX-11LCK-2026-SM-5A5MA 30-39 years, male 31236.3
GTEX-Y9LG-1526-SM-4WWDR 30-39 years, male 29914.2
GTEX-13QBU-1826-SM-5IJG3 40-49 years, female 29564.8
GTEX-14DAR-1526-SM-5RQIX 50-59 years, male 27841.0
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 27493.4
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 26884.3
GTEX-ZPIC-2226-SM-57WDX 40-49 years, female 26566.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

974.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 974.9
FF:10014-101C5 62,83,84 years, mixed 974.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.