Expression of SAMD13 in cancer - Summary

GENERAL INFORMATION
Gene name	SAMD13
Gene description	Sterile alpha motif domain containing 13
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	7
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HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):	Mixed
HPA (cell line):	Mixed
HPA (normal tissue):	Tissue enhanced (rectum, testis)

Protein evidence

Evidence at protein level

Protein expression
normal tissue

Granular cytoplasmic expression in several tissues, most abundant in gastrointestinal tract.

ANTIBODY IHC RELIABILITY
Data reliability description	Antibody staining consistent with RNA expression data. Pending external verification.
Reliability score	Supported based on 1 antibody. HPA058929
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PROGNOSTIC SUMMARY
Prognostic marker in glioma (favourable).
Glioma p<0.001 Show all

RNA EXPRESSION OVERVIEW
TCGA dataset RNA cancer category: Mixed

PROTEIN EXPRESSION

STAINING SUMMARY

HPA058929

GENE INFORMATION
Gene name	SAMD13
Synonyms
Description	Sterile alpha motif domain containing 13 (HGNC Symbol)
Entrez gene summary
Chromosome	1
Cytoband	p31.1
Chromosome location (bp)	84298366 - 84389957
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000203943 (version 83.38)
Entrez gene	148418
UniProt	Q5VXD3 (UniProt - Evidence at transcript level)
neXtProt	NX_Q5VXD3
Antibodypedia	SAMD13 antibodies

PROTEIN BROWSER

SAMD13-001	SAMD13-002	SAMD13-003	SAMD13-004	SAMD13-005	SAMD13-007	SAMD13-008

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SAMD13-001 ENSP00000359702 ENST00000370668	Q5VXD3 [Direct mapping] Sterile alpha motif domain-containing protein 13 Show all	Predicted intracellular proteins Show all	GO:0005515 [protein binding] Show all	102 aa 11.5 kDa	No	0
SAMD13-002 ENSP00000359707 ENST00000370673	Q5VXD3 [Direct mapping] Sterile alpha motif domain-containing protein 13 Show all	Predicted intracellular proteins Show all	GO:0005515 [protein binding] Show all	116 aa 13 kDa	No	0
SAMD13-003 ENSP00000359705 ENST00000370671	Q5VXD3 [Direct mapping] Sterile alpha motif domain-containing protein 13 Show all	Predicted intracellular proteins Show all	GO:0005515 [protein binding] Show all	122 aa 13.6 kDa	No	0
SAMD13-004 ENSP00000378311 ENST00000394834	Q5VXD3 [Direct mapping] Sterile alpha motif domain-containing protein 13 Show all	Predicted intracellular proteins Show all	GO:0005515 [protein binding] Show all	102 aa 11.5 kDa	No	0
SAMD13-005 ENSP00000359703 ENST00000370669	Q5VXD3 [Direct mapping] Sterile alpha motif domain-containing protein 13 Show all	Predicted intracellular proteins Show all	GO:0005515 [protein binding] Show all	102 aa 11.5 kDa	No	0
SAMD13-007 ENSP00000391978 ENST00000454967	H7BZX5 [Direct mapping] Sterile alpha motif domain-containing protein 13 Show all	Predicted intracellular proteins Show all		50 aa 5.8 kDa	No	0
SAMD13-008 ENSP00000359704 ENST00000370670	Q5VXD3 [Direct mapping] Sterile alpha motif domain-containing protein 13 Show all	Predicted intracellular proteins Show all	GO:0005515 [protein binding] Show all	102 aa 11.5 kDa	No	0