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COLON - Expression summary

RNA expression
HPA:4.7TPM
GTEx:0.7RPKM
FANTOM5:1.4Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

4.7
overview Male, age 54 Sample 1
TPM: 1.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 6.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 16.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.4
Samples: 149

Max RPKM: 9.3
Min RPKM: 0.0
Std RPKM: 0.9
Median RPKM: 0.2
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 9.3
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 3.9
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 2.9
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 2.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 1.9
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 1.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 1.5
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 1.4
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 1.4
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 1.3
Show all
Colon - Transverse
RPKM: 0.9
Samples: 196

Max RPKM: 9.9
Min RPKM: 0.0
Std RPKM: 1.4
Median RPKM: 0.3
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 9.9
GTEX-XUZC-1326-SM-4BRV2 30-39 years, female 8.7
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 6.8
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 5.8
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 4.9
GTEX-RM2N-0926-SM-48FD1 50-59 years, male 4.8
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 4.7
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 4.7
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 3.7
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 3.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1.4
FF:10014-101C5 62,83,84 years, mixed 1.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.