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COLON - Expression summary

RNA expression
HPA:19.2TPM
GTEx:16.8RPKM
FANTOM5:39.5Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

19.2
overview Male, age 54 Sample 1
TPM: 20.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 24.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 22.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 31.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 19.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 19.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 27.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 24.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

16.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 19.9
Samples: 149

Max RPKM: 39.0
Min RPKM: 9.1
Std RPKM: 5.5
Median RPKM: 18.8
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 39.0
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 37.7
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 32.8
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 31.4
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 31.2
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 31.1
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 30.2
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 30.0
GTEX-145LS-2926-SM-5O99G 60-69 years, female 28.9
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 28.7
Show all
Colon - Transverse
RPKM: 14.5
Samples: 196

Max RPKM: 52.0
Min RPKM: 4.7
Std RPKM: 7.9
Median RPKM: 12.3
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 52.0
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 44.7
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 40.5
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 36.8
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 35.3
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 35.1
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 33.1
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 30.4
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 30.2
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 29.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

39.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 39.5
FF:10014-101C5 62,83,84 years, mixed 39.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.