Cell atlas - ZBED5 - The Human Protein Atlas

GENERAL INFORMATION
Gene name	ZBED5
Gene description	Zinc finger, BED-type containing 5
Protein class	Predicted intracellular proteins Transcription factors
Predicted localization	Intracellular
Number of transcripts	6
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HUMAN PROTEIN ATLAS INFORMATION
Summary	Mainly localized to the Golgi apparatus. In addition localized to the nucleus & nucleoli (fibrillar center).
RNA cell category	Expressed in all
Protein evidence	Evidence at protein level
Main location	Localized to the Golgi apparatus (approved)
Additional location	In addition localized to the Nucleus (approved), Nucleoli fibrillar center (approved)

DATA RELIABILITY
Reliability score	Approved based on 1 antibody. HPA050994
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ASSAYS

RNA expression

Human cells

RNA EXPRESSION OVERVIEW
RNA cell line category: Expressed in all Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

HUMAN CELLS

Summary

Mainly localized to the Golgi apparatus. In addition localized to the nucleus & nucleoli (fibrillar center).

Main location

Golgi apparatus (approved)

Additional location

Nucleus (approved), Nucleoli fibrillar center (approved)


	Toggle channels	Low High G1 S G2 M N/A

Antibody	Cell line	Location
HPA050994	A-431	Nucleus
		Nucleoli fibrillar center
		Golgi apparatus
HPA050994	HEK 293	Nucleus
		Nucleoli fibrillar center
		Golgi apparatus
HPA050994	U-2 OS	Nucleus
		Nucleoli fibrillar center
		Golgi apparatus

GENE INFORMATION
Gene name	ZBED5 (HGNC Symbol)
Synonyms	Buster1
Description	Zinc finger, BED-type containing 5 (HGNC Symbol)
Entrez gene summary	This gene is unusual in that its coding sequence is mostly derived from Charlie-like DNA transposon; however, it does not appear to be an active DNA transposon as it is not flanked by terminal inverted repeats. The encoded protein is conserved among the mammalian Laurasiatheria branch. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Jan 2009]
Chromosome	11
Cytoband	p15.4
Chromosome location (bp)	10812074 - 10858796
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000236287 (version 83.38)
Entrez gene	58486
UniProt	Q49AG3 (UniProt - Evidence at transcript level)
neXtProt	NX_Q49AG3
Antibodypedia	ZBED5 antibodies

PROTEIN BROWSER

ZBED5-001	ZBED5-002	ZBED5-003	ZBED5-006	ZBED5-007	ZBED5-008

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
ZBED5-001 ENSP00000398106 ENST00000432999	Q49AG3 [Direct mapping] Zinc finger BED domain-containing protein 5 Show all	SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Transcription factors Zinc-coordinating DNA-binding domains Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0046872 [metal ion binding] Show all	693 aa 78.9 kDa	No	0
ZBED5-002 ENSP00000433093 ENST00000526020	E9PM71 [Direct mapping] Zinc finger BED domain-containing protein 5 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		109 aa 12.4 kDa	No	0
ZBED5-003 ENSP00000415939 ENST00000413761	Q49AG3 [Direct mapping] Zinc finger BED domain-containing protein 5 Show all	SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Transcription factors Zinc-coordinating DNA-binding domains Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0003677 [DNA binding] GO:0046872 [metal ion binding] Show all	693 aa 78.9 kDa	No	0
ZBED5-006 ENSP00000435491 ENST00000534690	E9PJT5 [Direct mapping] Zinc finger BED domain-containing protein 5 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		69 aa 7.8 kDa	No	0
ZBED5-007 ENSP00000432764 ENST00000528289	E9PNT1 [Direct mapping] Zinc finger BED domain-containing protein 5 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		60 aa 6.8 kDa	No	0
ZBED5-008 ENSP00000435663 ENST00000526852	E9PJ57 [Direct mapping] Zinc finger BED domain-containing protein 5 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		92 aa 10.4 kDa	No	0