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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:30.0TPM
GTEx:16.2RPKM
FANTOM5:18.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA000525

  

Antibody CAB019285

  

Endothelial cells

 Not detected   High  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 High  
   
   
   

COLON - HPA RNA-seq

Average TPM

30.0
overview Male, age 54 Sample 1
TPM: 22.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 28.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 27.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 18.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 26.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 46
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 48.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 29.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 30.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 27.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 33.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 29
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

16.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 17.3
Samples: 149

Max RPKM: 28.1
Min RPKM: 8.8
Std RPKM: 2.8
Median RPKM: 16.8
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 28.1
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 26.6
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 25.4
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 24.3
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 23.8
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 23.0
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 22.4
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 22.1
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 21.9
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 21.4
Show all
Colon - Transverse
RPKM: 15.3
Samples: 196

Max RPKM: 22.2
Min RPKM: 5.3
Std RPKM: 2.8
Median RPKM: 15.5
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 22.2
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 21.6
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 21.4
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 21.4
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 21.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 20.9
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 20.7
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 20.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 20.6
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 20.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

18.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 18.8
FF:10014-101C5 62,83,84 years, mixed 18.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.