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Gene name

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Chromosome

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In atlas

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Method

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Method

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MC1R
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PATHOLOGY ATLAS

GENE/PROTEIN

Dictionary

GENERAL INFORMATION

Gene name

MC1R

Gene description

Melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)

Protein class

Disease related genes
G-protein coupled receptors
Potential drug targets
Predicted membrane proteins

Predicted localization

Membrane

Number of transcripts

2
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):Tissue enhanced (melanoma)
HPA (cell line):Cell line enhanced (SK-MEL-30)
HPA (normal tissue):Tissue enhanced (testis)

Protein evidence

Evidence at protein level

ANTIBODY IHC RELIABILITY

Reliability score

Pending cancer tissue analysis.

PROGNOSTIC SUMMARY

Prognostic marker in pancreatic cancer (favourable).
Pancreatic cancer p<0.001
Show all

RNA EXPRESSION OVERVIEW

TCGA dataset
RNA cancer category: Tissue enhanced (melanoma)

PROTEIN EXPRESSION

Pending cancer tissue analysis


STAINING SUMMARY

 

GENE INFORMATION

Gene name

MC1R (HGNC Symbol)

Synonyms

MSH-R

Description

Melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) (HGNC Symbol)

Entrez gene summary

This intronless gene encodes the receptor protein for melanocyte-stimulating hormone (MSH). The encoded protein, a seven pass transmembrane G protein coupled receptor, controls melanogenesis. Two types of melanin exist: red pheomelanin and black eumelanin. Gene mutations that lead to a loss in function are associated with increased pheomelanin production, which leads to lighter skin and hair color. Eumelanin is photoprotective but pheomelanin may contribute to UV-induced skin damage by generating free radicals upon UV radiation. Binding of MSH to its receptor activates the receptor and stimulates eumelanin synthesis. This receptor is a major determining factor in sun sensitivity and is a genetic risk factor for melanoma and non-melanoma skin cancer. Over 30 variant alleles have been identified which correlate with skin and hair color, providing evidence that this gene is an important component in determining normal human pigment variation. [provided by RefSeq, Jul 2008]

Chromosome

16

Cytoband

q24.3

Chromosome location (bp)

89912119 - 89920977

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000258839 (version 83.38)

Entrez gene

4157

UniProt

Q01726 (UniProt - Evidence at protein level)

neXtProt

NX_Q01726

Antibodypedia

MC1R antibodies

PROTEIN BROWSER

MC1R-001
MC1R-002

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

MC1R-001
ENSP00000451605
ENST00000555147
Q01726 [Direct mapping]
Melanocyte-stimulating hormone receptor
Q1JUL4 [Target identity:100%; Query identity:100%]
Melanocyte-stimulating hormone receptor
Show all
G-protein coupled receptors
   GPCRs excl olfactory receptors
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   GPCRHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Disease related genes
Potential drug targets
Show all
GO:0004930 [G-protein coupled receptor activity]
GO:0004977 [melanocortin receptor activity]
GO:0004980 [melanocyte-stimulating hormone receptor activity]
GO:0005515 [protein binding]
GO:0005622 [intracellular]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0007186 [G-protein coupled receptor signaling pathway]
GO:0007187 [G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger]
GO:0007275 [multicellular organismal development]
GO:0008528 [G-protein coupled peptide receptor activity]
GO:0009650 [UV protection]
GO:0010739 [positive regulation of protein kinase A signaling]
GO:0016021 [integral component of membrane]
GO:0019233 [sensory perception of pain]
GO:0030819 [positive regulation of cAMP biosynthetic process]
GO:0031625 [ubiquitin protein ligase binding]
GO:0032720 [negative regulation of tumor necrosis factor production]
GO:0035556 [intracellular signal transduction]
GO:0042438 [melanin biosynthetic process]
GO:0043473 [pigmentation]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
GO:0051897 [positive regulation of protein kinase B signaling]
GO:0070914 [UV-damage excision repair]
GO:0090037 [positive regulation of protein kinase C signaling]
Show all
317 aa
34.7 kDa
No 7
MC1R-002
ENSP00000451760
ENST00000555427
G3V4F0 [Direct mapping]
Melanocyte-stimulating hormone receptor
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   GPCRHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Show all
GO:0004930 [G-protein coupled receptor activity]
GO:0004980 [melanocyte-stimulating hormone receptor activity]
GO:0005886 [plasma membrane]
GO:0007186 [G-protein coupled receptor signaling pathway]
GO:0016021 [integral component of membrane]
Show all
382 aa
41.6 kDa
No 7

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