Expression of RP11-407N17.3 in cancer - Summary - The Human Protein Atlas

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RP11-407N17.3

TISSUE

CELL

PATHOLOGY

PATHOLOGY ATLAS

GENE/PROTEIN

Antibody validation

Dictionary


Level of antibody staining/expression
	High Medium Low Not detected

GENERAL INFORMATION
Gene name	RP11-407N17.3
Gene description
Protein class	Predicted membrane proteins
Predicted localization	Membrane
Number of transcripts	1
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HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):	Not detected
HPA (cell line):	Cell line enhanced (CAPAN-2, EFO-21, Hep G2, RPTEC TERT1)
HPA (normal tissue):	Group enriched (duodenum, kidney, liver, parathyroid gland, small intestine)

Protein evidence

Evidence at protein level

Protein expression
normal tissue

Cytoplasmic expression in several tissues.

ANTIBODY IHC RELIABILITY
Data reliability description	Pending external verification. Caution, targets protein from more than one gene. Presumed off target binding observed and disregarded.
Reliability score	Uncertain based on 4 antibodies. HPA000387 , HPA000922 , HPA054066 , HPA055459
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PROGNOSTIC SUMMARY
Gene product is not prognostic.
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RNA EXPRESSION OVERVIEW
TCGA dataset RNA cancer category: Not detected

PROTEIN EXPRESSION

Colorectal cancer

Prostate cancer

STAINING SUMMARY

HPA000387	HPA000922	HPA054066	HPA055459

GENE INFORMATION
Gene name	RP11-407N17.3
Synonyms
Description
Entrez gene summary
Chromosome	14
Cytoband	q21.1
Chromosome location (bp)	39233902 - 39350423
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000258941 (version 83.38)
Entrez gene
UniProt
neXtProt
Antibodypedia	RP11-407N17.3 antibodies

PROTEIN BROWSER

RP11-407N17.3-001

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
RP11-407N17.3-001 ENSP00000452252 ENST00000553728	G3V599 [Direct mapping] Uncharacterized protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005515 [protein binding] GO:0016021 [integral component of membrane] Show all	1339 aa 151.7 kDa	Yes	1

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.