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IFRD1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:23.3TPM
GTEx:11.0RPKM
FANTOM5:85.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA024122

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

23.3
overview Male, age 54 Sample 1
TPM: 23.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 19.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 18.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 35.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 17.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 26
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 18.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 20.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 23.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 19.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 29.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 23.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 27
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.9
Samples: 149

Max RPKM: 27.5
Min RPKM: 6.0
Std RPKM: 3.8
Median RPKM: 11.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 27.5
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 27.2
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 21.9
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 20.5
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 20.1
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 20.0
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 19.3
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 19.2
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 19.0
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 18.8
Show all
Colon - Transverse
RPKM: 10.3
Samples: 196

Max RPKM: 123.2
Min RPKM: 5.1
Std RPKM: 9.6
Median RPKM: 8.4
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 123.2
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 67.3
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 22.6
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 20.5
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 19.6
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 19.5
GTEX-Y3I4-1426-SM-4TT9C 50-59 years, male 19.0
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 17.9
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 17.6
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 17.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

85.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 85.6
FF:10014-101C5 62,83,84 years, mixed 85.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.