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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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AASS
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    CELL

  • PATHOLOGY

PATHOLOGY ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

GENERAL INFORMATION

Gene name

AASS

Gene description

Aminoadipate-semialdehyde synthase

Protein class

Disease related genes
Enzymes
Potential drug targets
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

2
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HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):Expressed in all
HPA (cell line):Cell line enhanced (AN3-CA, NTERA-2)
HPA (normal tissue):Mixed

Protein evidence

Evidence at protein level

Protein expression
normal tissue

General cytoplasmic expression, most abundant in hepatocytes.

ANTIBODY IHC RELIABILITY

Data reliability
description

Antibody staining consistent with RNA expression data.

Reliability score

Supported based on 3 antibodies.
HPA020637 , HPA020728 , HPA020734
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PROGNOSTIC SUMMARY

Prognostic marker in liver cancer (favourable).
Liver cancer p<0.001
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RNA EXPRESSION OVERVIEW

TCGA dataset
RNA cancer category: Expressed in all

PROTEIN EXPRESSION

Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer
Liver cancer

STAINING SUMMARY

HPA020637
HPA020728
HPA020734

Cancer

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Cancer

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Testicular cancers exhibited moderate to strong cytoplasmic immunoreactivity. Many cases of prostate, thyroid and hepatocellular carcinomas as well as a few cases of gliomas and melanomas showed moderate staining. The remaining tumors were in general negative.

Cancer

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Cancer

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Most cancer cells were weakly stained or negative. Melanomas, gliomas, testicular, hepatocellular, prostate and thyroid cancers displayed moderate to strong cytoplasmic immunoreactivity.

Cancer

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Cancer

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Testicular cancers displayed several cases with strong cytoplasmic positivity. Glioma, prostate and liver cancers showed moderate staining.

GENE INFORMATION

Gene name

AASS (HGNC Symbol)

Synonyms

LKRSDH, LORSDH

Description

Aminoadipate-semialdehyde synthase (HGNC Symbol)

Entrez gene summary

This gene encodes a bifunctional enzyme that catalyzes the first two steps in the mammalian lysine degradation pathway. The N-terminal and the C-terminal portions of this enzyme contain lysine-ketoglutarate reductase and saccharopine dehydrogenase activity, respectively, resulting in the conversion of lysine to alpha-aminoadipic semialdehyde. Mutations in this gene are associated with familial hyperlysinemia. [provided by RefSeq, Jul 2008]

Chromosome

7

Cytoband

q31.32

Chromosome location (bp)

122075647 - 122144280

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000008311 (version 83.38)

Entrez gene

10157

UniProt

Q9UDR5 (UniProt - Evidence at protein level)

neXtProt

NX_Q9UDR5

Antibodypedia

AASS antibodies

PROTEIN BROWSER

AASS-001
AASS-003

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

AASS-001
ENSP00000403768
ENST00000417368
Q9UDR5 [Direct mapping]
Alpha-aminoadipic semialdehyde synthase, mitochondrial Lysine ketoglutarate reductase Saccharopine dehydrogenase
A4D0W4 [Target identity:100%; Query identity:100%]
Aminoadipate-semialdehyde synthase; Aminoadipate-semialdehyde synthase, isoform CRA_a
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Enzymes
   ENZYME proteins
   Oxidoreductases
   MEMSAT3 predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Disease related genes
Potential drug targets
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0005759 [mitochondrial matrix]
GO:0006554 [lysine catabolic process]
GO:0016491 [oxidoreductase activity]
GO:0033512 [L-lysine catabolic process to acetyl-CoA via saccharopine]
GO:0034641 [cellular nitrogen compound metabolic process]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044281 [small molecule metabolic process]
GO:0047130 [saccharopine dehydrogenase (NADP+, L-lysine-forming) activity]
GO:0047131 [saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity]
GO:0051262 [protein tetramerization]
GO:0055114 [oxidation-reduction process]
Show all
926 aa
102.1 kDa
No 0
AASS-003
ENSP00000377040
ENST00000393376
Q9UDR5 [Direct mapping]
Alpha-aminoadipic semialdehyde synthase, mitochondrial Lysine ketoglutarate reductase Saccharopine dehydrogenase
A4D0W4 [Target identity:100%; Query identity:100%]
Aminoadipate-semialdehyde synthase; Aminoadipate-semialdehyde synthase, isoform CRA_a
Show all
Enzymes
   ENZYME proteins
   Oxidoreductases
   MEMSAT3 predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Disease related genes
Potential drug targets
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005739 [mitochondrion]
GO:0005759 [mitochondrial matrix]
GO:0006554 [lysine catabolic process]
GO:0016491 [oxidoreductase activity]
GO:0019477 [L-lysine catabolic process]
GO:0033512 [L-lysine catabolic process to acetyl-CoA via saccharopine]
GO:0034641 [cellular nitrogen compound metabolic process]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0044281 [small molecule metabolic process]
GO:0047130 [saccharopine dehydrogenase (NADP+, L-lysine-forming) activity]
GO:0047131 [saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity]
GO:0051262 [protein tetramerization]
GO:0055114 [oxidation-reduction process]
Show all
926 aa
102.1 kDa
No 0

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