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IFFO1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.7TPM
GTEx:11.5RPKM
FANTOM5:20.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA069344

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

2.7
overview Male, age 54 Sample 1
TPM: 3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 4.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 14.3
Samples: 149

Max RPKM: 24.2
Min RPKM: 6.5
Std RPKM: 3.8
Median RPKM: 14.1
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 24.2
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 23.6
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 23.4
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 22.5
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 22.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 21.9
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 21.4
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 21.1
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 21.1
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 20.7
Show all
Colon - Transverse
RPKM: 9.5
Samples: 196

Max RPKM: 31.1
Min RPKM: 2.3
Std RPKM: 4.6
Median RPKM: 8.4
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 31.1
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 22.5
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 22.4
GTEX-11GSP-1626-SM-5986N 60-69 years, female 21.5
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 20.6
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 20.4
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 19.5
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 19.4
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 18.4
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 17.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

20.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 20.6
FF:10014-101C5 62,83,84 years, mixed 20.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.