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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:21.1TPM
GTEx:29.9RPKM
FANTOM5:32.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA023189

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

21.1
overview Male, age 54 Sample 1
TPM: 25.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 12.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 18.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 20.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 19.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 26.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 23.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 15.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 25.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 23.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 27
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

29.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 34.2
Samples: 149

Max RPKM: 54.0
Min RPKM: 17.3
Std RPKM: 8.7
Median RPKM: 33.1
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 54.0
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 53.4
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 51.3
GTEX-12KS4-2326-SM-5EGJB 30-39 years, male 50.6
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 50.4
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 50.3
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 49.7
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 49.3
GTEX-147JS-2626-SM-5S2UX 60-69 years, male 48.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 48.4
Show all
Colon - Transverse
RPKM: 26.6
Samples: 196

Max RPKM: 49.8
Min RPKM: 9.7
Std RPKM: 7.6
Median RPKM: 25.0
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 49.8
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 49.8
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 49.5
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 45.3
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 44.3
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 43.1
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 42.2
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 42.1
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 42.0
GTEX-11GSP-1626-SM-5986N 60-69 years, female 41.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

32.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 32.3
FF:10014-101C5 62,83,84 years, mixed 32.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.