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APBA3

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.0TPM
GTEx:7.7RPKM
FANTOM5:11.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA045577

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

2.0
overview Male, age 54 Sample 1
TPM: 5.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 3.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.2
Samples: 149

Max RPKM: 15.4
Min RPKM: 4.1
Std RPKM: 1.9
Median RPKM: 7.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 15.4
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 13.0
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 12.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 12.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 11.8
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 11.8
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 11.7
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 11.6
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 11.5
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 11.3
Show all
Colon - Transverse
RPKM: 7.2
Samples: 196

Max RPKM: 11.5
Min RPKM: 2.4
Std RPKM: 1.6
Median RPKM: 7.1
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 11.5
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 11.3
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 11.2
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 11.1
GTEX-Q734-1126-SM-48TZY 40-49 years, female 10.9
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 10.8
GTEX-P78B-1726-SM-3P5ZV 40-49 years, female 10.5
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 10.4
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 10.1
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 10.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

11.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 11.6
FF:10014-101C5 62,83,84 years, mixed 11.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.