Tissue expression of RGPD5 - Summary - The Human Protein Atlas

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RGPD5

TISSUE

CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	RGPD5
Gene description	RANBP2-like and GRIP domain containing 5
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	6
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Tissue enhanced (testis)
GTEx:	Not detected
FANTOM5:	Mixed

Protein evidence

Evidence at protein level

Protein expression

Estimation of protein expression could not be performed. View primary data.

DATA RELIABILITY
Data reliability description	RNA-based expert annotation gave inconclusive results. Caution, targets protein from more than one gene.
Reliability score	Uncertain based on 3 antibodies. HPA045704 , HPA049497 , HPA051675
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

N/A

Caudate

N/A

N/A

Cerebellum

N/A

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

N/A

Bronchus

N/A

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

N/A

Skin

N/A

Skin

N/A

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
RNA-based expert annotation could not be performed, due to inconclusive results. View immunohistochemistry primary data.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (testis)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Not detected
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Mixed

GENE INFORMATION
Gene name	RGPD5 (HGNC Symbol)
Synonyms	BS-63, DKFZp686I1842, RGP5
Description	RANBP2-like and GRIP domain containing 5 (HGNC Symbol)
Entrez gene summary	RAN is a small GTP-binding protein of the RAS superfamily that is associated with the nuclear membrane and is thought to control a variety of cellular functions through its interactions with other proteins. This gene shares a high degree of sequence identity with RANBP2, a large RAN-binding protein localized at the cytoplasmic side of the nuclear pore complex. It is believed that this RANBP2 gene family member arose from a duplication event 3 Mb distal to RANBP2. Alternative splicing has been observed for this locus and two variants are described. Additional splicing is suggested but complete sequence for further transcripts has not been determined. [provided by RefSeq, Jul 2008]
Chromosome	2
Cytoband	q13
Chromosome location (bp)	109792758 - 109857695
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000015568 (version 83.38)
Entrez gene	84220
UniProt	Q99666 (UniProt - Evidence at protein level)
neXtProt	NX_Q99666
Antibodypedia	RGPD5 antibodies

PROTEIN BROWSER

RGPD5-001	RGPD5-002	RGPD5-008	RGPD5-009	RGPD5-010	RGPD5-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
RGPD5-001 ENSP00000016946 ENST00000016946	Q99666 [Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6 V9HWE4 [Target identity:100%; Query identity:100%] Epididymis luminal protein 161 Show all	MEMSAT3 predicted membrane proteins Predicted intracellular proteins Show all	GO:0000042 [protein targeting to Golgi] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0046907 [intracellular transport] Show all	1765 aa 198.9 kDa	No	0
RGPD5-002 ENSP00000376962 ENST00000393283	Q99666 [Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6 Show all	MEMSAT3 predicted membrane proteins Predicted intracellular proteins Show all	GO:0000042 [protein targeting to Golgi] GO:0005515 [protein binding] GO:0005737 [cytoplasm] Show all	904 aa 103.3 kDa	No	0
RGPD5-008 ENSP00000392556 ENST00000430736	C9J1W9 [Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6 Show all	Predicted intracellular proteins Show all	GO:0005515 [protein binding] Show all	134 aa 15.7 kDa	No	0
RGPD5-009 ENSP00000411548 ENST00000441344	C9J6W1 [Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6; RANBP2-like and GRIP domain-containing protein 8 Show all	Predicted intracellular proteins Show all	GO:0005515 [protein binding] Show all	152 aa 18 kDa	No	0
RGPD5-010 ENSP00000400797 ENST00000432606	C9J1P2 [Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6 Show all	Predicted intracellular proteins Show all		56 aa 6.8 kDa	No	0
RGPD5-201 ENSP00000272454 ENST00000272454	Q99666 [Direct mapping] RANBP2-like and GRIP domain-containing protein 5/6 Show all	MEMSAT3 predicted membrane proteins Predicted intracellular proteins Show all	GO:0000042 [protein targeting to Golgi] GO:0005515 [protein binding] GO:0005737 [cytoplasm] Show all	904 aa 103.3 kDa	No	0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.