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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.9TPM
GTEx:4.4RPKM
FANTOM5:8.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA063793

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

4.9
overview Male, age 54 Sample 1
TPM: 2.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 34.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.9
Samples: 149

Max RPKM: 43.4
Min RPKM: 0.0
Std RPKM: 7.3
Median RPKM: 2.0
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 43.4
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 38.8
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 29.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 28.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 28.2
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 26.4
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 26.0
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 19.3
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 16.9
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 16.7
Show all
Colon - Transverse
RPKM: 4.0
Samples: 196

Max RPKM: 79.4
Min RPKM: 0.0
Std RPKM: 10.6
Median RPKM: 1.0
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 79.4
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 66.4
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 62.7
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 55.8
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 42.0
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 37.0
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 33.7
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 22.9
GTEX-117YX-0826-SM-5H11J 50-59 years, male 21.1
GTEX-SE5C-1526-SM-4BRWU 40-49 years, female 20.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

8.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 8.4
FF:10014-101C5 62,83,84 years, mixed 8.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.