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NCDN

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.5TPM
GTEx:9.1RPKM
FANTOM5:15.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA023676

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

4.5
overview Male, age 54 Sample 1
TPM: 6.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 4.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 5.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 3.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.2
Samples: 149

Max RPKM: 18.2
Min RPKM: 4.5
Std RPKM: 2.2
Median RPKM: 11.4
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 18.2
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 16.6
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 16.0
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 15.7
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 15.5
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 15.3
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 15.2
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 15.2
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 14.9
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 14.5
Show all
Colon - Transverse
RPKM: 7.4
Samples: 196

Max RPKM: 15.8
Min RPKM: 1.7
Std RPKM: 3.3
Median RPKM: 7.2
GTEX-S341-1426-SM-4AD6U 40-49 years, female 15.8
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 15.3
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 14.9
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 14.6
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 13.7
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 13.5
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 13.3
GTEX-RU1J-1326-SM-46MUL 20-29 years, female 13.2
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 13.2
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 13.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

15.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 15.2
FF:10014-101C5 62,83,84 years, mixed 15.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.