We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
RNASET2
  • TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:76.3TPM
GTEx:22.0RPKM
FANTOM5:80.7Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:High
 

Antibody staining

Antibody HPA029013

 

Antibody HPA066509

 

Glandular cells

Not detected   High  
   
   
   

SMALL INTESTINE - HPA RNA-seq

Average TPM

76.3

overview Male, age 65 Sample 1
TPM: 69.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39 Sample 2
TPM: 68.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68 Sample 3
TPM: 85.9
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85 Sample 4
TPM: 81.8

SMALL INTESTINE - GTEx RNA-seq

Average RPKM

22.0

GTEx sample id

Sample description

RPKM

Small Intestine - Terminal Ileum
RPKM: 22.0
Samples: 88

Max RPKM: 59.6
Min RPKM: 3.8
Std RPKM: 12.7
Median RPKM: 18.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 59.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 50.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 48.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 48.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 48.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 47.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 46.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 45.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 45.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 44.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 41.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 40.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 40.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 37.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 36.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 36.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 35.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 33.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 32.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 32.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 29.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 28.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 27.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 26.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 24.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 24.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 23.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 22.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 22.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 22.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 22.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 21.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 21.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 21.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 21.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 21.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 20.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 19.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 19.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 19.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 19.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 19.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 19.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 18.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 18.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 18.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 17.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 17.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 17.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 17.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 17.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 17.0
GTEX-ZYWO-1526-SM-5SIAL 40-49 years, female 16.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 16.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 15.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 15.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 14.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 14.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 14.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 14.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 14.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 14.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 14.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 13.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 13.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 13.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 12.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 12.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 12.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 12.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 12.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 12.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 12.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 11.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 11.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 9.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 9.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 9.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 8.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 8.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 8.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 7.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 6.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 6.8
GTEX-1192X-2526-SM-59868 50-59 years, male 5.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 5.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 4.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 3.8
Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million

80.7

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 80.7
FF:10024-101D6 15,40,85 years, mixed 80.7

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.