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PSMA4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:105.9TPM
GTEx:36.9RPKM
FANTOM5:84.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA055466

  

Antibody HPA060613

  

Antibody CAB004973

  

Endothelial cells

 Not detected   Medium   Low  

Glandular cells

 Medium   Medium   Medium  

Peripheral nerve/ganglion

 Medium   Medium   Low  
     
     

COLON - HPA RNA-seq

Average TPM

105.9
overview Male, age 54 Sample 1
TPM: 111.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 93.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 100.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 120
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 94.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 126
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 134.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 106.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 109.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 110.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 100.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 98
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 71.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

36.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 35.0
Samples: 149

Max RPKM: 53.7
Min RPKM: 21.2
Std RPKM: 5.6
Median RPKM: 34.1
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 53.7
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 52.3
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 51.7
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 51.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 50.5
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 50.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 49.6
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 46.0
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 45.9
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 45.8
Show all
Colon - Transverse
RPKM: 38.3
Samples: 196

Max RPKM: 77.6
Min RPKM: 17.1
Std RPKM: 8.2
Median RPKM: 37.1
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 77.6
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 64.8
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 61.7
GTEX-SNOS-1226-SM-4DM5H 40-49 years, male 60.4
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 59.0
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 58.3
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 57.2
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 56.9
GTEX-144GN-1126-SM-5LU33 50-59 years, male 55.7
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 55.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

84.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 84.3
FF:10014-101C5 62,83,84 years, mixed 84.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.