Tissue expression of NOP16 - Summary - The Human Protein Atlas

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NOP16

TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	NOP16
Gene description	NOP16 nucleolar protein
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	7
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Nucleolar staining at variable levels in all tissues.

DATA RELIABILITY
Data reliability description	Antibody staining mainly not consistent with RNA expression data.
Reliability score	Approved based on 1 antibody. HPA036506
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	NOP16 (HGNC Symbol)
Synonyms	HSPC111, HSPC185, LOC51491
Description	NOP16 nucleolar protein (HGNC Symbol)
Entrez gene summary	NOP16 is transcriptionally regulated by c-Myc (MYC; MIM 190080), upregulated in breast cancer, and overexpression is associated with poor patient survival (Butt et al., 2008).[supplied by OMIM, Jun 2009]
Chromosome	5
Cytoband	q35.2
Chromosome location (bp)	176383938 - 176388975
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000048162 (version 83.38)
Entrez gene	51491
UniProt	Q9Y3C1 (UniProt - Evidence at protein level)
neXtProt	NX_Q9Y3C1
Antibodypedia	NOP16 antibodies

PROTEIN BROWSER

NOP16-001	NOP16-002	NOP16-008	NOP16-009	NOP16-201	NOP16-202	NOP16-203

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
NOP16-001 ENSP00000480832 ENST00000614830	Q9Y3C1 [Direct mapping] Nucleolar protein 16 Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005634 [nucleus] GO:0005730 [nucleolus] GO:0042273 [ribosomal large subunit biogenesis] GO:0043231 [intracellular membrane-bounded organelle] GO:0044822 [poly(A) RNA binding] Show all	178 aa 21.2 kDa	No	0
NOP16-002 ENSP00000479445 ENST00000621444	A0A0C4DGU5 [Direct mapping] Nucleolar protein 16 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0042273 [ribosomal large subunit biogenesis] Show all	231 aa 26.4 kDa	No	0
NOP16-008 ENSP00000478283 ENST00000616685	A0A087WU10 [Direct mapping] Nucleolar protein 16 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0042273 [ribosomal large subunit biogenesis] Show all	70 aa 8.1 kDa	No	0
NOP16-009 ENSP00000427489 ENST00000509257	D6RIC3 [Direct mapping] Nucleolar protein 16 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005634 [nucleus] GO:0005730 [nucleolus] GO:0042273 [ribosomal large subunit biogenesis] GO:0043231 [intracellular membrane-bounded organelle] Show all	150 aa 17.2 kDa	No	0
NOP16-201 ENSP00000484440 ENST00000613081	A0A087X1T1 [Direct mapping] Nucleolar protein 16 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0042273 [ribosomal large subunit biogenesis] Show all	236 aa 26.9 kDa	No	0
NOP16-202 ENSP00000483001 ENST00000618911	Q9Y3C1 [Direct mapping] Nucleolar protein 16 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005634 [nucleus] GO:0005730 [nucleolus] GO:0042273 [ribosomal large subunit biogenesis] GO:0043231 [intracellular membrane-bounded organelle] GO:0044822 [poly(A) RNA binding] Show all	232 aa 26.6 kDa	No	0
NOP16-203 ENSP00000484969 ENST00000619979	A0A087X2G6 [Direct mapping] Nucleolar protein 16 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0042273 [ribosomal large subunit biogenesis] Show all	237 aa 27.4 kDa	No	0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.