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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:10.1TPM
GTEx:12.7RPKM
FANTOM5:67.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA070395

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

10.1
overview Male, age 54 Sample 1
TPM: 8.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 12.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 20
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 7.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 12.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 14.9
Samples: 149

Max RPKM: 38.5
Min RPKM: 4.7
Std RPKM: 5.3
Median RPKM: 14.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 38.5
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 37.2
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 31.1
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 26.8
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 26.5
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 26.4
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 25.0
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 23.9
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 23.8
GTEX-13111-1926-SM-5GCOL 50-59 years, male 22.0
Show all
Colon - Transverse
RPKM: 11.1
Samples: 196

Max RPKM: 41.7
Min RPKM: 2.8
Std RPKM: 6.9
Median RPKM: 8.5
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 41.7
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 37.7
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 35.4
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 33.1
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 28.6
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 28.3
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 27.1
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 25.7
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 24.7
GTEX-117YX-0826-SM-5H11J 50-59 years, male 24.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

67.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 67.9
FF:10014-101C5 62,83,84 years, mixed 67.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.