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VAMP3

COLON - Expression summary

RNA expression
HPA:67.6TPM
GTEx:35.5RPKM
FANTOM5:115.6Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

67.6
overview Male, age 54 Sample 1
TPM: 52.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 53.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 52.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 72.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 50.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 78.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 80.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 75.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 73.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 80.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 76.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 75.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 55.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

35.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 37.3
Samples: 149

Max RPKM: 53.8
Min RPKM: 25.8
Std RPKM: 5.5
Median RPKM: 36.9
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 53.8
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 53.2
GTEX-145LS-2926-SM-5O99G 60-69 years, female 51.9
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 50.6
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 50.2
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 49.8
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 49.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 49.4
GTEX-12696-1926-SM-5EGJT 60-69 years, male 49.3
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 47.6
Show all
Colon - Transverse
RPKM: 34.2
Samples: 196

Max RPKM: 63.3
Min RPKM: 22.0
Std RPKM: 6.7
Median RPKM: 32.7
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 63.3
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 57.4
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 56.9
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 54.5
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 53.6
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 52.9
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 50.4
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 49.5
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 49.2
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 49.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

115.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 115.6
FF:10014-101C5 62,83,84 years, mixed 115.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.