Fields »
ABOUT
HELP
BLOG
RCN1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:56.7TPM
GTEx:12.7RPKM
FANTOM5:35.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA038474

  

Antibody HPA062104

  

Endothelial cells

 Not detected   Medium  

Glandular cells

 Low   Medium  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   

COLON - HPA RNA-seq

Average TPM

56.7
overview Male, age 54 Sample 1
TPM: 84.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 72.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 63.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 42.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 105.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 53.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 52.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 33.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 53.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 58.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 41.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 49.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 26.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 13.0
Samples: 149

Max RPKM: 30.3
Min RPKM: 8.3
Std RPKM: 3.5
Median RPKM: 12.3
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 30.3
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 27.4
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 23.5
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 22.7
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 22.0
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 21.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 20.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 19.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 19.6
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 19.5
Show all
Colon - Transverse
RPKM: 12.5
Samples: 196

Max RPKM: 31.0
Min RPKM: 4.3
Std RPKM: 4.3
Median RPKM: 11.1
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 31.0
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 29.0
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 25.8
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 25.6
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 25.2
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 23.4
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 22.0
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 22.0
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 21.7
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 21.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

35.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 35.2
FF:10014-101C5 62,83,84 years, mixed 35.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.