Fields »
ABOUT
HELP
BLOG
LIMA1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:127.1TPM
GTEx:26.9RPKM
FANTOM5:178.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA023871

  

Antibody HPA052645

  

Endothelial cells

 High   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

127.1
overview Male, age 54 Sample 1
TPM: 129.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 110.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 102.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 182.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 88.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 79.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 156.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 123.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 88.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 174.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 160.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 148.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 107.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

26.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 16.8
Samples: 149

Max RPKM: 51.2
Min RPKM: 5.2
Std RPKM: 7.1
Median RPKM: 15.2
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 51.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 34.4
GTEX-145LS-2926-SM-5O99G 60-69 years, female 34.4
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 34.1
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 31.8
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 31.8
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 31.1
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 30.9
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 30.4
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 29.8
Show all
Colon - Transverse
RPKM: 34.6
Samples: 196

Max RPKM: 80.4
Min RPKM: 6.1
Std RPKM: 14.6
Median RPKM: 34.5
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 80.4
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 69.8
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 67.3
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 66.0
GTEX-144GM-1226-SM-5LU52 20-29 years, male 65.1
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 64.1
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 61.7
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 58.9
GTEX-R55G-1226-SM-48FDC 40-49 years, female 58.7
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 56.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

178.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 178.2
FF:10014-101C5 62,83,84 years, mixed 178.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.