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RNF4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:25.6TPM
GTEx:9.8RPKM
FANTOM5:49.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA049356

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 High  
 
 

COLON - HPA RNA-seq

Average TPM

25.6
overview Male, age 54 Sample 1
TPM: 25.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 24.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 21.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 22.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 19
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 27.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 32.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 28.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 26.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 27.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 29.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 26.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 20.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.7
Samples: 149

Max RPKM: 18.8
Min RPKM: 7.1
Std RPKM: 1.5
Median RPKM: 9.4
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 18.8
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 15.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 15.1
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 14.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 12.5
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 12.2
GTEX-1122O-1426-SM-5H11R 60-69 years, female 12.1
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 12.1
GTEX-12696-1926-SM-5EGJT 60-69 years, male 12.1
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 12.0
Show all
Colon - Transverse
RPKM: 9.9
Samples: 196

Max RPKM: 16.2
Min RPKM: 5.8
Std RPKM: 1.4
Median RPKM: 9.8
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 16.2
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 15.7
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 15.0
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 13.3
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 13.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 12.9
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 12.9
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 12.7
GTEX-QMRM-1226-SM-447C6 50-59 years, male 12.3
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 12.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

49.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 49.9
FF:10014-101C5 62,83,84 years, mixed 49.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.