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COLON - Expression summary

RNA expression
HPA:19.9TPM
GTEx:8.8RPKM
FANTOM5:28.0Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

19.9
overview Male, age 54 Sample 1
TPM: 21
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 19.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 22.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 23.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 21
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 16.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 17.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 25.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 22.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.3
Samples: 149

Max RPKM: 14.2
Min RPKM: 2.7
Std RPKM: 2.1
Median RPKM: 7.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 14.2
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 13.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 12.9
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 12.9
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 12.5
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 12.4
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 11.9
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 11.7
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 11.6
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 11.3
Show all
Colon - Transverse
RPKM: 10.0
Samples: 196

Max RPKM: 19.1
Min RPKM: 4.0
Std RPKM: 2.9
Median RPKM: 9.9
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 19.1
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 17.1
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 17.1
GTEX-139YR-2126-SM-5KM11 50-59 years, male 16.0
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 15.8
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 15.8
GTEX-P4QT-1426-SM-3NMCX 50-59 years, female 15.2
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 15.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 15.0
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 14.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

28.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 28.0
FF:10014-101C5 62,83,84 years, mixed 28.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.