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PKM

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:216.3TPM
GTEx:101.2RPKM
FANTOM5:260.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA029501

  

Antibody CAB019421

  

Endothelial cells

 Medium   Not detected  

Glandular cells

 Medium   Low  

Peripheral nerve/ganglion

 Medium   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

216.3
overview Male, age 54 Sample 1
TPM: 172.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 191.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 193.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 182.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 173.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 261.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 251
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 204.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 265.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 249.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 302.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 229.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 134.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

101.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 88.3
Samples: 149

Max RPKM: 228.7
Min RPKM: 50.5
Std RPKM: 20.1
Median RPKM: 85.2
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 228.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 138.4
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 131.5
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 123.0
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 122.1
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 121.2
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 120.4
GTEX-111CU-1226-SM-5EGIN 50-59 years, male 118.6
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 118.3
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 117.6
Show all
Colon - Transverse
RPKM: 111.0
Samples: 196

Max RPKM: 287.1
Min RPKM: 47.8
Std RPKM: 36.5
Median RPKM: 101.4
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 287.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 240.0
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 236.3
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 229.2
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 227.5
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 224.1
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 208.1
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 188.2
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 188.1
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 180.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

260.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 260.1
FF:10014-101C5 62,83,84 years, mixed 260.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.