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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:29.0TPM
GTEx:117.5RPKM
FANTOM5:112.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Not detected
 

Antibody staining

Antibody HPA058340

  

Endothelial cells

 Medium  

Glandular cells

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

29.0
overview Male, age 54 Sample 1
TPM: 20.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 25.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 99.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 55.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 50.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 44.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

117.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 182.6
Samples: 149

Max RPKM: 375.1
Min RPKM: 51.6
Std RPKM: 48.4
Median RPKM: 176.6
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 375.1
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 313.4
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 302.0
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 297.3
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 290.4
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 286.6
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 283.0
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 271.8
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 263.9
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 258.9
Show all
Colon - Transverse
RPKM: 68.0
Samples: 196

Max RPKM: 231.0
Min RPKM: 2.8
Std RPKM: 61.8
Median RPKM: 50.3
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 231.0
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 208.7
GTEX-11GSP-1626-SM-5986N 60-69 years, female 208.2
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 199.0
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 195.6
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 190.1
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 187.7
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 187.3
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 185.2
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 183.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

112.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 112.2
FF:10014-101C5 62,83,84 years, mixed 112.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.