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SREBF1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:16.6TPM
GTEx:26.4RPKM
FANTOM5:74.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA043343

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

16.6
overview Male, age 54 Sample 1
TPM: 33
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 15.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 30.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 17.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 14.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 11.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

26.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 22.8
Samples: 149

Max RPKM: 62.0
Min RPKM: 6.8
Std RPKM: 8.2
Median RPKM: 21.5
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 62.0
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 42.3
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 40.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 39.4
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 38.9
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 37.0
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 36.7
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 36.6
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 36.5
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 36.4
Show all
Colon - Transverse
RPKM: 29.1
Samples: 196

Max RPKM: 116.1
Min RPKM: 6.6
Std RPKM: 13.4
Median RPKM: 26.0
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 116.1
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 73.8
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 68.3
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 66.4
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 65.4
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 59.8
GTEX-X15G-1326-SM-4PQZJ 50-59 years, female 59.3
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 57.8
GTEX-QMRM-1226-SM-447C6 50-59 years, male 56.4
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 54.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

74.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 74.9
FF:10014-101C5 62,83,84 years, mixed 74.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.