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SMARCE1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:31.8TPM
GTEx:3.9RPKM
FANTOM5:42.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA003916

  

Antibody CAB037318

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

31.8
overview Male, age 54 Sample 1
TPM: 45.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 59.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 57.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 22.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 50.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 25.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 22.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 20.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 22.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 21.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 31.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 19.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.9
Samples: 149

Max RPKM: 6.0
Min RPKM: 1.9
Std RPKM: 0.9
Median RPKM: 3.9
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 6.0
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 6.0
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 5.8
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 5.8
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 5.8
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 5.7
GTEX-13111-1926-SM-5GCOL 50-59 years, male 5.6
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 5.5
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 5.5
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 5.3
Show all
Colon - Transverse
RPKM: 3.9
Samples: 196

Max RPKM: 6.2
Min RPKM: 0.9
Std RPKM: 0.8
Median RPKM: 3.8
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 6.2
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 5.9
GTEX-117YX-0826-SM-5H11J 50-59 years, male 5.8
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 5.6
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 5.3
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 5.2
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 5.2
GTEX-144GN-1126-SM-5LU33 50-59 years, male 5.2
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 5.2
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 5.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

42.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 42.3
FF:10014-101C5 62,83,84 years, mixed 42.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.