Tissue expression of CLNS1A - Staining in adipose tissue - The Human Protein Atlas

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CLNS1A

TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA ADIPOSE TISSUE

GENE/PROTEIN

Antibody validation

Dictionary
	Soft tissue


Tissue proteome
	Adipose

SOFT TISSUE - Expression summary

Protein expression

h

m

l

n

RNA expression

HPA:	54.7	TPM
GTEx:	10.9	RPKM
FANTOM5:	46.6	Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Medium
Fibroblasts:	Not detected
Peripheral nerve:	Not detected

Antibody staining	Antibody HPA031707		Antibody HPA031708		Antibody HPA032045		Antibody CAB017840
Adipocytes	Not detected		High		Not detected		Low
Fibroblasts	Not detected		Not detected		Not detected		Not detected
Peripheral nerve	Not detected		Not detected		Not detected		Not detected

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Medium
Fibroblasts:	Not detected
Peripheral nerve:	Not available

Antibody staining	Antibody HPA031707		Antibody HPA031708		Antibody HPA032045		Antibody CAB017840
Adipocytes	Not detected		Medium		Not detected		Not detected
Fibroblasts	Not detected		Not detected		Not detected		Not detected
Peripheral nerve	Not detected		Not detected		Medium

ADIPOSE TISSUE - HPA RNA-seq

Average TPM	54.7

N/A

Female, age 80

Sample 1
TPM: 50.4

Cell types%

Adipocytes: 95
Other cell types: 5

N/A

Female, age 45

Sample 2
TPM: 50.4

N/A

Female, age 57

Sample 3
TPM: 47.6

Cell types%

Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 74

Sample 4
TPM: 73.2

Cell types%

Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 59

Sample 5
TPM: 51.8

Cell types%

Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM	10.9

GTEx sample id

Sample description

RPKM

Adipose - Subcutaneous
RPKM: 10.8

Samples: 350

Max RPKM: 17.2
Min RPKM: 6.7
Std RPKM: 1.4
Median RPKM: 10.7

GTEX-ZYVF-0226-SM-5GIEG

50-59 years, female

17.2

GTEX-WFJO-1926-SM-3GILA

30-39 years, male

16.3

GTEX-POMQ-2326-SM-5S2VS

20-29 years, female

16.1

GTEX-13FHP-0226-SM-5K7WD

50-59 years, male

16.0

GTEX-Y5V6-2526-SM-5IFJV

60-69 years, male

15.7

GTEX-S4Q7-1626-SM-3K2AE

20-29 years, male

14.3

GTEX-ZVP2-1826-SM-5GU62

50-59 years, male

14.2

GTEX-11DZ1-0226-SM-5A5KF

50-59 years, male

13.6

GTEX-NPJ8-0226-SM-48TBN

40-49 years, male

13.6

GTEX-QV31-1326-SM-2S1QE

30-39 years, male

13.6

Show all

Adipose - Visceral (Omentum)
RPKM: 11.1

Samples: 227

Max RPKM: 17.7
Min RPKM: 5.6
Std RPKM: 2.1
Median RPKM: 11.1

GTEX-11PRG-1526-SM-5HL6Z

50-59 years, male

17.7

GTEX-XLM4-1026-SM-4AT51

60-69 years, male

16.2

GTEX-11DYG-2026-SM-5EGGX

60-69 years, male

15.9

GTEX-13X6H-1726-SM-5Q5EH

50-59 years, female

15.6

GTEX-12WSC-1726-SM-5GCN3

50-59 years, male

15.2

GTEX-ZUA1-2126-SM-57YRB

40-49 years, male

15.2

GTEX-XOT4-0826-SM-4B66Y

60-69 years, female

14.7

GTEX-XBEC-1826-SM-4QASN

50-59 years, male

14.6

GTEX-11DXY-0326-SM-5H12F

60-69 years, male

14.5

GTEX-132NY-1126-SM-5PNVE

60-69 years, male

14.5

Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million	46.6

FANTOM5 sample id

Sample description

Tags Per Million

Adipose tissue
Tags Per Million: 46.6

65,65,76 years, mixed

46.6

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.