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CLNS1A

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:72.2TPM
GTEx:11.3RPKM
FANTOM5:62.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA031707

  

Antibody HPA031708

  

Antibody HPA032045

  

Antibody CAB017840

  

Endothelial cells

 Not detected   Medium   Not detected   Not detected  

Glandular cells

 High   Medium   Low   Medium  

Peripheral nerve/ganglion

 Not detected   Low   Not detected   Medium  
       
       
       

COLON - HPA RNA-seq

Average TPM

72.2
overview Male, age 54 Sample 1
TPM: 72
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 76.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 54.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 57.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 57.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 76
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 96.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 72.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 62.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 100.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 76
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 85.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 51.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

11.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.4
Samples: 149

Max RPKM: 13.3
Min RPKM: 7.0
Std RPKM: 1.2
Median RPKM: 10.3
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 13.3
GTEX-12696-1926-SM-5EGJT 60-69 years, male 13.3
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 13.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 13.2
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 13.1
GTEX-145LS-2926-SM-5O99G 60-69 years, female 13.1
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 13.0
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 12.7
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 12.6
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 12.5
Show all
Colon - Transverse
RPKM: 12.1
Samples: 196

Max RPKM: 18.6
Min RPKM: 6.6
Std RPKM: 1.9
Median RPKM: 12.1
GTEX-1128S-1626-SM-5H12O 60-69 years, female 18.6
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 18.0
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 16.8
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 16.1
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 16.0
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 15.8
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 15.7
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 15.3
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 15.1
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 15.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

62.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 62.7
FF:10014-101C5 62,83,84 years, mixed 62.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.